1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcaagtgagcttattgtccccggttttcataaccatgtgtatccatctactttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC
species | Oryza sativa |
transcript | LOC_Os01g34620.9 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|86501844|gb|CI144477.1|CI144477
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|86510934|gb|CI153567.1|CI153567
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|33662135|gb|CF293102.1|CF293102
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|86825099|gb|CI358251.1|CI358251
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|218500313|gb|FG954965.1|FG954965
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAAC-A
EST: TCAAAGGAGAGTAAGTAGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTACGGATGTGCTTGGEST: gi|38477159|gb|CF961292.1|CF961292
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGG
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|86431345|gb|CI084956.1|CI084956
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
actttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC
ttttcttc CT-rich tract
ttatttgtgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgagcttattgtccccggttttcataaccatgtgtatccatctactttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG