1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagcttattgtccccggttttcataaccatgtgtatccatctactttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagaagGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC
species | Oryza sativa |
transcript | LOC_Os01g34620.7 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGAGAGTAAGTAGGGGGATCTGATATCATATTAGATATGCATCAG--AA GGGTCAGCTTACGGATGTGCTTGGEST: gi|33680953|gb|CF309192.1|CF309192
genomic: AGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGGCAAgtgagcttat ... tcttcagaagGG-TCAGCTTAAGGATGTGCTTGG
EST: AGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCA-G-AA GEST: gi|33680953|gb|CF309192.1|CF309192
genomic: AGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGGCAAgtgagcttat ... tcttcagaag-
EST: AGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCA-G-AA GEST: gi|38477159|gb|CF961292.1|CF961292
genomic: AGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGGCAAgtgagcttat ... tcttcagaag-
EST: AGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG--AA GGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAA
genomic: AGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGGCAAgtgagcttat ... tcttcagaagGG-TCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAA
ttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagaagGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC
ttttcttc CT-rich tract
ttatttgtgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttattgtccccggttttcataaccatgtgtatccatctactttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagaagGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG