1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcaagtgagcttattgtccccggttttcataaccatgtgtatccatctactttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATA
species | Oryza sativa |
transcript | LOC_Os01g34620.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGGAGAGTAAGTAGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTACGGATGTGCTTGGEST: gi|86596721|gb|CI286634.1|CI286634
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGG
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|33808806|gb|CF330288.1|CF330288
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|86530108|gb|CI170314.1|CI170314
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|86255832|gb|CI066895.1|CI066895
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAEST: gi|88960503|gb|CI006464.1|CI006464
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
EST: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAG AAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
genomic: TCAAAGGAGAGTTTGTTGGGGGATCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAA
actttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATA
ttttcttc CT-rich tract
ttatttgtgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgagcttattgtccccggttttcataaccatgtgtatccatctactttcttaattcttaactcagtaattgattccttatttgtgtaattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGTGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG