1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaactactatctgtatatattgtcttaacttattttttcaagaagaaccagaagaaatgggttgccttatttacttttttttttgttgacgcggtagcctattgcttatgatgtctttatgactgcagAACAAAGACAGGTTGGGGAGACTGCACTAAATGACACCAGTTCACGTTCCCACCAGATCATTAGGCTG
species | Oryza sativa |
transcript | LOC_Os01g33040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAG AACAAAGACAGGTTGGGGAGACTGCACTAAATGACACCAGTTCACGTTCCCEST: gi|58657566|gb|CK046246.1|CK046246
genomic: AATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAGgtaactacta ... atgactgcagAACAAAGACAGGTTGGGGAGACTGCACTAAATGACACCAGTTCACGTTCCC
EST: AATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAG AACAAAGACAGGTTGGGGAGACTGCACTAAATGACACCAGTTCACGTTCCC
genomic: AATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAGgtaactacta ... atgactgcagAACAAAGACAGGTTGGGGAGACTGCACTAAATGACACCAGTTCACGTTCCC
cttttttttttgttgacgcggtagcctattgcttatgatgtctttatgactgcagAACAAAGACAGGTTGGGGAGACTGCACTAAATGACACCAGTTCACGTTCCCACCAGATCATTAGGCTG
tgttgac putative branch site (score: 4)
tctttat putative PPT
ttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactactatctgtatatattgtcttaacttattttttcaagaagaaccagaagaaatgggttgccttatttacttttttttttgttgacgcggtagcctattgcttatgatgtctttatgactgcagAACAAAGACAGGTTGGGGAGACTGCACTAAATGACACCAGTTCACGTTCCCACCAGATCATTAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA