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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatttatttagcactttgcattacttgagttatgcctaacaaacttcttttttttttgaaatgcagAAAGTTCGTCAAAGGTGCCGGAAACTTGCAGCAAGATTAGGTTGCAGGTCGGTTGGATTGGACGACGTGTACCAACCGGGGAGACTACCACCACCACTAC

Basic information

species Oryza sativa
transcript LOC_Os01g28740.1
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttgcattacttgagttatgcctaacaaacttcttttttttttgaaatgcagAAAGTTCGTCAAAGGTGCCGGAAACTTGCAGCAAGATTAGGTTGCAGGTCGGTTGGATTGGACGACGTGTACCAACCGGGGAGACTACCACCACCACTAC
                      gcctaac  putative branch site (score: 2)
                                cttctttttttttt  putative PPT
                             aaacttcttttttttt  TA-rich tract