1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttggttgcaagataaagcatctttacaactttgctcacaaatttcaaatttcagactgtcctgatagtgcgaaattgtcatgtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACA
species | Oryza sativa |
transcript | LOC_Os01g18800.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGEST: gi|86596798|gb|CI286711.1|CI286711
genomic: GAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCEST: gi|58590709|gb|CF989017.1|CF989017
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCC
EST: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGEST: gi|700085|gb|D46376.1|D46376
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGEST: gi|29624069|gb|CB629080.1|CB629080
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGEST: gi|29638650|gb|CB643659.1|CB643659
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGEST: gi|4714882|gb|AU055999.1|AU055999
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: CGGATACCTTCCCTTTGGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGEST: gi|88387547|gb|CI583065.1|CI583065
genomic: CGGATACCTTCCCTTTG-ATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGEST: gi|58659268|gb|CK047948.1|CK047948
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTT-CAAGGGGGACACTCAAATCC-AAAGTGGCTT-CACCTAGTGCACGGEST: gi|58664713|gb|CK053399.1|CK053399
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
acaaatttcaaatttcagactgtcctgatagtgcgaaattgtcatgtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACA
tatcttt CT-rich tract
tttcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttgcaagataaagcatctttacaactttgctcacaaatttcaaatttcagactgtcctgatagtgcgaaattgtcatgtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT