1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctctgagttttcgcttccatgaatccatcgatgttttccttccatgattgagtagcatcatctgctagtattttaaatattgctgtggcatttttgcagCTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAAGAGTTTCCGGCTCTTGGAGACGCAAACATGCGGAATCTCAAACAAGGAG
species | Oryza sativa |
transcript | LOC_Os01g16520.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTATCTCTCTCGTTGGTAGAGTTTGACTACCTAATCAAAAAGAAAAAG CTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAAEST: gi|88459938|gb|CI524397.1|CI524397
genomic: TTGTATCTCTCTCGTTGGTAGAGTTTGACTACCTAATCAAAAAGAAAAAGgtaacacgtt ... atttttgcagCTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAA
EST: TTGTATCTCTCTCGTTGGTAGAGTTTGAGTACCTAATCAAAAAGAAAAAG CTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAAEST: gi|88906504|gb|CI375576.1|CI375576
genomic: TTGTATCTCTCTCGTTGGTAGAGTTTGACTACCTAATCAAAAAGAAAAAGgtaacacgtt ... atttttgcagCTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAA
EST: TTGTATCTCTCTCGTTGTTAGAGTTGGACTACCTAATCAAAAAGAAAAAG CTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAA
genomic: TTGTATCTCTCTCGTTGGTAGAGTTTGACTACCTAATCAAAAAGAAAAAGgtaacacgtt ... atttttgcagCTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAA
tgattgagtagcatcatctgctagtattttaaatattgctgtggcatttttgcagCTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAAGAGTTTCCGGCTCTTGGAGACGCAAACATGCGGAATCTCAAACAAGGAG
cattttt CT-rich tract
tagtattttaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctgagttttcgcttccatgaatccatcgatgttttccttccatgattgagtagcatcatctgctagtattttaaatattgctgtggcatttttgcagCTGGAAGAAGATGATAATTTCCTTGACAATCTTAATCCATGCACTTGCCAAGAGTTTCCGGCTCTTGGAGACGCAAACATGCGGAATCTCAAACAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - -ttccatg
- - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctgt