1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatttattattatatttccttgtctttagagtttgaccaaaggctcaaaacatgcctatttttctgtctgcagttctaactatttatgctcgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTC
species | Oryza sativa |
transcript | LOC_Os01g16330.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAG ATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGEST: gi|29661709|gb|CB657984.1|CB657984
genomic: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
EST: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAG ATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGEST: gi|88398176|gb|CI588064.1|CI588064
genomic: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
EST: TGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCCATCCGCAGGATGAAG ATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGEST: gi|29661710|gb|CB657985.1|CB657985
genomic: TGCTGGTTCTCTCTATCGTCTGAACGTGCTTGG-CATCCGCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
EST: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAG ATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGEST: gi|218487612|gb|FG952665.1|FG952665
genomic: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
EST: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAG ATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGEST: gi|33689953|gb|CF318192.1|CF318192
genomic: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
EST: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGAAGAAG ATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGEST: gi|23513675|gb|BU673250.1|BU673250
genomic: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
EST: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAG ATGCCACAGGTTATTGCATCGTTTTTCGCAAGAATTTTCGCACCTTCTTCGEST: gi|29657193|gb|CB653468.1|CB653468
genomic: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
EST: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAG ATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGEST: gi|86427044|gb|CI072141.1|CI072141
genomic: TTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
EST: GCAGGATGAAG ATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
genomic: GCAGGATGAAGgtaagttctc ... cgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCG
caaaacatgcctatttttctgtctgcagttctaactatttatgctcgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTC
ttctaac putative branch site (score: 5)
ttctaactatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttattattatatttccttgtctttagagtttgaccaaaggctcaaaacatgcctatttttctgtctgcagttctaactatttatgctcgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTC
- - - - - - - - - - - - - - - - - gaccaaa
- - - - - - - - - - - - - - - - - - - - - -ctcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgct