1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcaagttcatcgccatttttactgaggagaccgatttcaattttctattctttatatttggttaagacaaatagatcgctttgttgcatctactcaactaactactatttttgtttgtttgcaaatgttttcccttctattgtgtaactccttttgacttctaatttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACGTTGGAAG
species | Oryza sativa |
transcript | LOC_Os01g16170.5 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29677586|gb|CB673861.1|CB673861
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29641025|gb|CB646032.1|CB646032
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29663395|gb|CB659670.1|CB659670
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29678252|gb|CB674527.1|CB674527
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29664316|gb|CB660591.1|CB660591
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29621708|gb|CB626719.1|CB626719
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29681320|gb|CB677595.1|CB677595
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29676459|gb|CB672734.1|CB672734
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29677836|gb|CB674111.1|CB674111
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACEST: gi|29639706|gb|CB644715.1|CB644715
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
EST: AAATATGAAAAGAGGGAATGCTGAG GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
genomic: AAATATGAAAAGAGGGAATGCTGAGgcaagttcat ... tttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATAC
tgcaaatgttttcccttctattgtgtaactccttttgacttctaatttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACGTTGGAAG
ttctaat putative branch site (score: 8)
tttcattc CT-rich tract
taatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagttcatcgccatttttactgaggagaccgatttcaattttctattctttatatttggttaagacaaatagatcgctttgttgcatctactcaactaactactatttttgtttgtttgcaaatgttttcccttctattgtgtaactccttttgacttctaatttcattcagGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACGTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG