1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gttagactgtctgacatttacattttatagtgtgctaccttgaatgtctattgaagtttgaattgatccatatttatatgggcgtgggtcttctgttcagATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAAT
species | Oryza sativa |
transcript | LOC_Os01g14810.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTTCCTTAATACCCTTTTCTCTGTGTCAGAAGCTGTTATGTTCATGCAG ATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTGEST: gi|66923280|gb|CX110128.1|CX110128
genomic: AGTTCCTTAATACCCTTTTCTCTGTGTCAGAAGCTGTTATGTTCATGCAGgtcaattacc ... ttctgttcagATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTG
EST: AGTTCCTTAATACCCTTTTCTCTGTGTCAGAAGCTGTTATGTTCATGCAG ATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTGEST: gi|29673384|gb|CB669659.1|CB669659
genomic: AGTTCCTTAATACCCTTTTCTCTGTGTCAGAAGCTGTTATGTTCATGCAGgtcaattacc ... ttctgttcagATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTG
EST: AGTTCCTTAATACCCTTTTCTCTGTGTCAGAAGCTGTTATGTTCATGCAG ATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTG
genomic: AGTTCCTTAATACCCTTTTCTCTGTGTCAGAAGCTGTTATGTTCATGCAGgtcaattacc ... ttctgttcagATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTG
gtctattgaagtttgaattgatccatatttatatgggcgtgggtcttctgttcagATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAAT
aattgat putative branch site (score: 4)
tcttctgttc putative PPT
atccatatttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagactgtctgacatttacattttatagtgtgctaccttgaatgtctattgaagtttgaattgatccatatttatatgggcgtgggtcttctgttcagATGGTCGACAAGTTGGATCAGGGGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA