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gtacaattttattggatgcaggattgctgctatttctgagaagttgatatgtttgtgtttctaatgttgaattatttggaatcggttgttgctcttgtcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTGGAGGAGCTCAG
species | Oryza sativa |
transcript | LOC_Os01g13190.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTEST: gi|29680232|gb|CB676507.1|CB676507
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTEST: gi|29685418|gb|CB681693.1|CB681693
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTNNNNNNNGCTGGTGTGACACATGTATTGAAAGCEST: gi|88422364|gb|CI689178.1|CI689178
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCT-AAAAAAGCTGGTGTGACACATGTATTGAAAGC
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTEST: gi|58678012|gb|CK066699.1|CK066699
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTEST: gi|117232645|gb|CT842234.1|CT842234
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAEST: gi|58673757|gb|CK062443.1|CK062443
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAA
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTEST: gi|29683233|gb|CB679508.1|CB679508
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTEST: gi|29662201|gb|CB658476.1|CB658476
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTEST: gi|58666767|gb|CK055453.1|CK055453
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTEST: gi|88583475|gb|CI700958.1|CI700958
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
EST: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAG GAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
genomic: AAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaatttt ... tcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCT
ttgtgtttctaatgttgaattatttggaatcggttgttgctcttgtcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTGGAGGAGCTCAG
ttctaat putative branch site (score: 20)
ttgctcttgtcctcc putative PPT
taatgttgaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaattttattggatgcaggattgctgctatttctgagaagttgatatgtttgtgtttctaatgttgaattatttggaatcggttgttgctcttgtcctccgcagGAGGTTCTTTACTGTGCTAAAAAAGCTGGTGTGACACATGTATTGAAAGCTGGAGGAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA