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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccattttgtttgaacacattgtttcagcacatctatgatatatccctttttttctgctcacgttcatgattcatatgatgtaactttgatgttgttgaagCATGGTTGTGGACAACGGTGCACCTGAAACTGCTCATGTTGGCGCTACCTGCAGTGCTATGTCATCTGAAATGGCTGTGAGTCCCTCATCGGCAGCATCA

Basic information

species Oryza sativa
transcript LOC_Os01g12080.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688061|gb|CK076748.1|CK076748
EST:     ATCCCTGCAGCTGGTGGTTATCATCCAATTCGCATGAACTCTGGAAATGA                         CATGGTTGTGGACAACGGTGCACCTGAAACTGCTCATGCTGGCGCTACCTG
genomic: ATCCCTGCAGCTGGTGGTTATCATCCAATTCGCATGAACTCTGGAAATGAgtaagcctta ... gttgttgaagCATGGTTGTGGACAACGGTGCACCTGAAACTGCTCATGTTGGCGCTACCTG
EST: gi|58598053|gb|CK008581.1|CK008581
EST:     ATCCCTGCAGCTGGTGGTTATCATCCAATTCGCATGAACTCTGGAAATGA                         CATAGGTTGTGGACAACGGTGACACCTGAAACTGCTCATGCTGGCGCTACC
genomic: ATCCCTGCAGCTGGTGGTTATCATCCAATTCGCATGAACTCTGGAAATGAgtaagcctta ... gttgttgaagCAT-GGTTGTGGACAACGGTG-CACCTGAAACTGCTCATGTTGGCGCTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttctgctcacgttcatgattcatatgatgtaactttgatgttgttgaagCATGGTTGTGGACAACGGTGCACCTGAAACTGCTCATGTTGGCGCTACCTGCAGTGCTATGTCATCTGAAATGGCTGTGAGTCCCTCATCGGCAGCATCA
                       attcatat  TA-rich tract