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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctctaatgtttacaacattgtcatggtttatggttgatgaccttttgaattaagatacttctattatttatagtctgttgctttctttcttgttttagGAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAA

Basic information

species Oryza sativa
transcript LOC_Os01g10280.4
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10280.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G133121_T02 (Zea mays), 3'ss of exon 6
tgctctaatgtttacaacattgtcatggtttatggttgatgaccttttgaattaagatacttctattatttatagtctgtt--gctttctttcttgt---tttagGAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAA
   ||  ||    |||||| | |   | | |||  || | ||| || |   |    ||  |  |   | | | ||| | ||    ||||| |||| |   |||||||||||||||| |||||||||||||||||||||   ||||| || |||||||||||||| |||||  | |||||
--atcctat-ccaacaacaat-tttcgttatattatt-aggactttctaggtacttattttaattacaatcacagtttattttattttctatcttttgtatttagGAGCTTTCTGTAATTGTGGCAAGGAGCAGAGACAACTCTACTGTCTGCTATCCTGTTGTGGAAACAGTTCACAA

upper sequence: LOC_Os01g10280.4 (Oryza sativa), 3'ss of exon 6
lower sequence: AT2G37690.1 (Arabidopsis thaliana), 3'ss of exon 7
tgctctaatgtttacaacattgtcatggtttatggttgatgaccttttgaattaagatacttctattatttatagtctgttgctttctttcttgttttagGAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAA
                    |   |||    ||  ||     | ||   || | |   |  |||   || |||| || |||||    | ||   ||||||||| |  |||| |||||||| ||| | ||||| ||||||| ||| || ||||| |||||||||||||| |||| 
-------------------gtaggatgacaaat--ttatctgctttagtaacttattgagctctgacatgtataatcggttgca---tatcaaattttagGAGTTAGCTGTTATTGTGGCTAGGGGGAGAGATGGTTCTATGGTTTGTTATCCCGTTGTTGAAACCATTCACAG

upper sequence: LOC_Os01g10280.4 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv14s0081g00240.t01 (Vitis vinifera), 3'ss of exon 6
tgctctaatgtttacaacattgtcatggttt-atggttgatgaccttttgaattaagatacttctattatttatagtctgttgctttctttcttgttttagGAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAA
  |  |  | ||||     |  | ||  ||| ||     |  |  |   || | |   |     |  || | |  |  | ||  |  |||| | | | ||||||||  | ||||||||||||||  | ||||||  |||||   |||||||||||||||||||||| || |||||
-acgtttttatttattgtttgtttattattttataaaaaaaaatgtgaagattaattgtgtaagtgatactgaaggattctttttccctttttggctgtagGAGCTGGCCGTCATTGTGGCAAGAGGAAGAGACAATTCTATTTTGTGCTATCCTGTTGTTGAAACTATTCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaattaagatacttctattatttatagtctgttgctttctttcttgttttagGAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAA
                              tctgttgctttctttc  CT-rich tract
     attaagatacttctat  TA-rich tract