Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgagcttattgtccccaggttttattaccaggtgtatccatctacaatttaattcttaactcagtagttgattccttattttgtataattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAAAAAGAATCATCATGAAGATGACAATAGTACGCCATTTTGGTCACGTGAG

Basic information

species Oryza sativa
transcript LOC_Os01g07950.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07950.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G880300_T02 (Zea mays), 3'ss of exon 6
gcaagtgagcttattgtccccaggttttattaccaggtgtatccatctacaatttaattcttaactcagtagttgattccttattttgtataattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAAAAAGAA-----TCA----TCATGAAGATGACAATAGTACGCCATTTTGGTCACGTGAG
                    || ||||  | ||  | |   |     ||  |  | ||| |    | | |||| | |   || |||   ||||| | |||||||||||| ||||||||||| | ||||| |||||||||||||   | || |||||||       |||    ||||||||    ||| |||| |   ||||           
-------------------gcaagtttc-tgacttgtttcgttagcatattagcttattgtc--tttactagtggctgatttctttgtcataatctccttcagAAGGGTGAGCTTAAGGATCTTCTTGGGGATATTGCACAAAGAGACGAACAAAAAGTGCATGCTCACGATTCATGAAGCAATCAACAGTAGGTTCTTTTAC---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88528217|gb|CI454441.1|CI454441
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88558857|gb|CI489384.1|CI489384
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|86869918|gb|CI316646.1|CI316646
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|86595567|gb|CI264664.1|CI264664
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88538548|gb|CI467587.1|CI467587
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88552434|gb|CI482440.1|CI482440
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88955766|gb|CI092055.1|CI092055
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88542355|gb|CI471679.1|CI471679
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88541651|gb|CI470933.1|CI470933
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88532187|gb|CI461652.1|CI461652
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCGTGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88528691|gb|CI456945.1|CI456945
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88476854|gb|CI414125.1|CI414125
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88491403|gb|CI428675.1|CI428675
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88523023|gb|CI450822.1|CI450822
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88199623|gb|CI199473.1|CI199473
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88836536|gb|CI010792.1|CI010792
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88239324|gb|CI240486.1|CI240486
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|33685064|gb|CF313303.1|CF313303
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|87013732|gb|CI269231.1|CI269231
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88278368|gb|CI399368.1|CI399368
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|86545203|gb|CI185409.1|CI185409
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88531278|gb|CI459743.1|CI459743
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|86539017|gb|CI179223.1|CI179223
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88542312|gb|CI471634.1|CI471634
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|87031444|gb|CI261818.1|CI261818
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|55441732|gb|CV734193.1|CV734193
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88504962|gb|CI432468.1|CI432468
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88530878|gb|CI459305.1|CI459305
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|86602178|gb|CI260648.1|CI260648
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|87033132|gb|CI187756.1|CI187756
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88277353|gb|CI398155.1|CI398155
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACCAAAGCATGACCCA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88842800|gb|CI371700.1|CI371700
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88532069|gb|CI461527.1|CI461527
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCGTGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88241295|gb|CI241144.1|CI241144
EST:     TCAAAGGAGAGTTTTTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88902750|gb|CI088288.1|CI088288
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATNAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|7332396|gb|AU085742.1|AU085742
EST:     TCAAAGGAGANTTTGTTGGGGGGTCTGATATCATATTAGATATG---CAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|33660934|gb|CF291901.1|CF291901
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
EST: gi|88546330|gb|CI475956.1|CI475956
EST:     TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAG                         AAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA
genomic: TCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 73 (downstream exon)
Score: 25

CAACTGGCCTACGTTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGgcaagtgagc ... ttttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAAAAAGAATCATCATGAAGATGACAATAGTACGCCATTTTGGTCACGTGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatttaattcttaactcagtagttgattccttattttgtataattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAAAAAGAATCATCATGAAGATGACAATAGTACGCCATTTTGGTCACGTGAG
                                             ttttcttc  CT-rich tract
                           attccttattttgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagtgagcttattgtccccaggttttattaccaggtgtatccatctacaatttaattcttaactcagtagttgattccttattttgtataattttcttcagAAGGGTCAGCTTAAGGATGTGCTTGGCGATATTGCACAAAAGCATGAGCAAAAAGAATCATCATGAAGATGACAATAGTACGCCATTTTGGTCACGTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG