1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atttaatatctgtccacaccacttttagctcatatataacttaagttattactcatgtcgagttgtatatgtataatcaactgcattacatggcatgcagAGGTGGACGTGGTGGCTATGGTGGAGGTCGCAGGGATAACTTCAGAGATGGAGGAGGCCATGGGCCTAACAGGCATCAAGGTGGTGGTTCGCGTTCAAGG
species | Oryza sativa |
transcript | LOC_Os01g07070.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTGCGATGGCTGAGAAATCAGCTCCTAGAGCTCCTGCATATGGTCATGG AGGTGGACGTGGTGGCTATGGTGGAGGTCEST: gi|89192658|gb|CI049956.1|CI049956
genomic: GTTGCGATGGCTGAGAAATCAGCTCCTAGAGCTCCTGCATATGGTCATGGgtaagtactt ... tggcatgcagAGGTGGACGTGGTGGCTATGGTGGAGGTC
EST: GTTGCGATGGCTGAGAAATCAGCTCCTAGAGCTCCTGCATATGGTCATGG AGGTGGACGTGGTGGCTATGGTGGAGGTCGCAGGGATAACTTCAGAGATGG
genomic: GTTGCGATGGCTGAGAAATCAGCTCCTAGAGCTCCTGCATATGGTCATGGgtaagtactt ... tggcatgcagAGGTGGACGTGGTGGCTATGGTGGAGGTCGCAGGGATAACTTCAGAGATGG
ttattactcatgtcgagttgtatatgtataatcaactgcattacatggcatgcagAGGTGGACGTGGTGGCTATGGTGGAGGTCGCAGGGATAACTTCAGAGATGGAGGAGGCCATGGGCCTAACAGGCATCAAGGTGGTGGTTCGCGTTCAAGG
ttgtatatgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaatatctgtccacaccacttttagctcatatataacttaagttattactcatgtcgagttgtatatgtataatcaactgcattacatggcatgcagAGGTGGACGTGGTGGCTATGGTGGAGGTCGCAGGGATAACTTCAGAGATGGAGGAGGCCATGGGCCTAACAGGCATCAAGGTGGTGGTTCGCGTTCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -acaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgca