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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG

Basic information

species Oryza sativa
transcript LOC_Os01g05490.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g05490.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G018177_T01 (Zea mays), 3'ss of exon 7
gtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattt---tgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG
                        |  ||| ||| |||  ||   ||||     | |    | | | |    |||         || |  |  ||     |  ||  ||   |||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||| |||||||| || || || |||||||| ||||||
-----------------------gtatacatacatttttggagcaattgacttgggg--tttcatgtgttggctgctaaaccatcttgtgacaatcacgcatgtgccttctgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G435244_T01 (Zea mays), 3'ss of exon 6
gtataaatctacagtatattttcttgaacaaacactttac--gattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattt-tgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG
                         | ||| ||| |||    ||   ||||     |||    ||| | |    |||         ||    || ||     || || ||  ||||||||| || ||||||   ||||||| ||| ||||| |||||| |||||||||| ||||||||||| |||||||| ||||| ||||||
-------------------------gtacatacattttgttggagccattgagttggtg--ttttatgtgctggctgctaaatcatctttg-ataatcacacacgtgcttcctgctacagGCTCTGTAACTACCGCGAACTACAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G370275_T01 (Zea mays), 3'ss of exon 6
gtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattt-tgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG
                         | ||| ||| |||      |    |      |    ||| | |    |||         ||    || ||     || || ||  ||||||||| || ||||||   ||||||| ||| ||||| |||||| |||||||||| ||||||||||| |||||||| ||||| ||||||
-------------------------gtacatacattttgttggagccatcgacttggtgttttatgtgctggctgctaaatcatctttg-ataatcacacacgtgcttcctgctacagGCTCTGTAACTACCGCGAACTACAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G030784_T02 (Zea mays), 3'ss of exon 9
gtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattt-tgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG
                         | ||| ||| |||      |    |      ||   ||| | |  | |||         ||     | ||     || ||  |  ||||||||| || ||||||| |||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||||| ||||| ||||||
-------------------------gtacatacattttgttggagccatcgacttggcgttttatgtgctagctgctaaatcatctttg-gtaatcacacacgtgcctcctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55442464|gb|CV734550.1|CV734550
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|58692189|gb|CK080876.1|CK080876
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATCTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|13806699|gb|AU181634.1|AU181634
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|30226725|gb|CB964617.1|CB964617
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88907449|gb|CI090243.1|CI090243
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88548876|gb|CI478710.1|CI478710
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|86883540|gb|CI338080.1|CI338080
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88997963|gb|CI037848.1|CI037848
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCCAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88322429|gb|CI540397.1|CI540397
EST:     ATCATCTATGGAG                         GTTCCTTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATNTTG
genomic: ATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88281321|gb|CI402717.1|CI402717
EST:     GCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: GCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|13896033|gb|AU182369.1|AU182369
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|55440349|gb|CV733484.1|CV733484
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|86883877|gb|CI328808.1|CI328808
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88516871|gb|CI444451.1|CI444451
EST:     GCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: GCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|58586868|gb|CF985176.1|CF985176
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAGGGGGGCTGGCAGCAAAGCCTGATGTT
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCA-AGGAGCTGGCAGCAAAGCCTGATGTT
EST: gi|86261062|gb|CI004627.1|CI004627
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|33663594|gb|CF294561.1|CF294561
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88263078|gb|CI366852.1|CI366852
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88509826|gb|CI437332.1|CI437332
EST:     GGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: GGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|13896024|gb|AU182360.1|AU182360
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88384045|gb|CI548386.1|CI548386
EST:     TGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88485416|gb|CI422687.1|CI422687
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAAGTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|157650012|gb|EX449646.1|EX449646
EST:     TTCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCGGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88843726|gb|CI010984.1|CI010984
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|30228883|gb|CB966774.1|CB966774
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCCACCAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCCAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88486380|gb|CI423651.1|CI423651
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88551873|gb|CI481966.1|CI481966
EST:     TCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88284199|gb|CI405645.1|CI405645
EST:     TCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGGTGGCAGCAAAGCCTGATGTTG
genomic: TCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88456433|gb|CI561036.1|CI561036
EST:     GTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: GTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|11233263|gb|AU164704.1|AU164704
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88851375|gb|CI404427.1|CI404427
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAAGTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|13805816|gb|AU181212.1|AU181212
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88984472|gb|CI015023.1|CI015023
EST:     CTAATTGTCAGTGCAAGAGGTTGCTGAATCGACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGTACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: CTAA-TGTCAGTGC-AGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|30226751|gb|CB964643.1|CB964643
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88541953|gb|CI471257.1|CI471257
EST:     TAATGTCAGTGCAGAGGTTNCTGAATCAACAAGGATCATCTAT-GAGG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTT
genomic: TAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGA-Ggtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTT
EST: gi|13806462|gb|AU181530.1|AU181530
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|30227561|gb|CB965453.1|CB965453
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88522140|gb|CI449877.1|CI449877
EST:     CAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: CAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88437080|gb|CI524030.1|CI524030
EST:     TCAACAGGGATCATCTATGGAG                         GTTCCGTTACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|58696173|gb|CK084860.1|CK084860
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCCGTAAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCCTGATG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTT-CCGT-AACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAG-CCTGATG
EST: gi|55431263|gb|CV728641.1|CV728641
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88276696|gb|CI397498.1|CI397498
EST:     CAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCCAAGCCTGATGTTG
genomic: CAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88522177|gb|CI449919.1|CI449919
EST:     AAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: AAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88519924|gb|CI446476.1|CI446476
EST:     GAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGGCGGGCAGCAAAGCCTGATGTT
genomic: GAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGA-GCTGGCAGCAAAGCCTGATGTT
EST: gi|88553463|gb|CI483577.1|CI483577
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88525492|gb|CI453949.1|CI453949
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88509886|gb|CI437392.1|CI437392
EST:     TGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88510100|gb|CI437606.1|CI437606
EST:     TGGTAATGTCAGTGCAGAGGTTNCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88557252|gb|CI487645.1|CI487645
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCNACAAGGATCATTTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|13806014|gb|AU181310.1|AU181310
EST:     GTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: GTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88221091|gb|CI221047.1|CI221047
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGATCTGTCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88836596|gb|CI010852.1|CI010852
EST:     GTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: GTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|55441963|gb|CV734302.1|CV734302
EST:     TAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|88560271|gb|CI490918.1|CI490918
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|55438977|gb|CV732789.1|CV732789
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|86525455|gb|CI165661.1|CI165661
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGG---ATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
EST: gi|33687308|gb|CF315547.1|CF315547
EST:     TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAG                         GTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG
genomic: TGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 281

TGGTTTGTATTATTGTATCAGGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatct ... tttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggcgacaactgtcctggtgcctggacatgattgtttacatgattttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG
                                            ttttgct  CT-rich tract
                               attgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattttgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG