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...tttaacacttaaacaaagtagcagtaagatgtatgttgcttgttatagtttactgttgttctattatatgctgatttgcagtttccctctactatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAG
species | Oryza sativa |
transcript | LOC_Os01g01710.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCAEST: gi|29688464|gb|CB684739.1|CB684739
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
EST: ACAAAGTGANAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCAEST: gi|58674748|gb|CK063435.1|CK063435
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
EST: TGAGCACTCTGCTATATTTCAG TGTATACCAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCEST: gi|29681868|gb|CB678143.1|CB678143
genomic: TGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATA-CAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGC
EST: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAAGCTTGCCCGAAAGAGCACTTCGCCGCATTATTTTGACTGCAEST: gi|58696138|gb|CK084825.1|CK084825
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
EST: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCAEST: gi|29617049|gb|CB622061.1|CB622061
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
EST: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCAEST: gi|58669161|gb|CK057847.1|CK057847
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
EST: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCAEST: gi|29620626|gb|CB625637.1|CB625637
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
EST: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCAEST: gi|29620641|gb|CB625652.1|CB625652
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
EST: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTTGCCCGAAAGAGCACTTCGCCGCEST: gi|58694512|gb|CK083199.1|CK083199
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTT-GCCCGAAGGAGCACTTCGCCGC
EST: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCAEST: gi|38475522|gb|CF959655.1|CF959655
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
EST: ACAAAGTGAAAATACTTCCTGCGGGGTCTGAGCACTCTGCTATATTTCAG TGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
genomic: ACAAAGTGAAAATACTTCCTGCTGATTCTGAGCACTCTGCTATATTTCAGgtaccacaga ... actatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCA
tagtttactgttgttctattatatgctgatttgcagtttccctctactatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAG
tgctgat putative branch site (score: 68)
tttccctctactatc putative PPT
ttgttctattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaacacttaaacaaagtagcagtaagatgtatgttgcttgttatagtttactgttgttctattatatgctgatttgcagtttccctctactatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - aaacaaa
- - - - - - - - -gtagcag
- - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat