1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acagctaaaacaaccatgttttgtatgaaccaattagattggtccgtagtttacctgttttaagcttgtactgaatgttgcctggtgctatctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGAACAGTAATTCATGTACCTTTGCTTGTGATTGGCATTGACGTGAGAACC
species | Oryza sativa |
transcript | LOC_Os01g01350.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|88532305|gb|CI461783.1|CI461783
genomic: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: TACCGCTCCTGCACCAGTCCCATTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|33803103|gb|CF327422.1|CF327422
genomic: TACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|88532022|gb|CI461477.1|CI461477
genomic: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: TGCCAGCTGCACCTACCGCTCCTNCAGCAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGGTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|88532113|gb|CI461575.1|CI461575
genomic: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: CCTGCACCAGTCCCANTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|88557001|gb|CI487372.1|CI487372
genomic: CCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: CAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|88218574|gb|CI218423.1|CI218423
genomic: CAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|88551594|gb|CI481665.1|CI481665
genomic: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: CAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|88534217|gb|CI462923.1|CI462923
genomic: CAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: GCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|88528837|gb|CI457106.1|CI457106
genomic: GCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: GCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGEST: gi|86511478|gb|CI154111.1|CI154111
genomic: GCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
EST: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAG GTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
genomic: TGCCAGCTGCACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGgttagtttat ... tctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAG
gtagtttacctgttttaagcttgtactgaatgttgcctggtgctatctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGAACAGTAATTCATGTACCTTTGCTTGTGATTGGCATTGACGTGAGAACC
tgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagctaaaacaaccatgttttgtatgaaccaattagattggtccgtagtttacctgttttaagcttgtactgaatgttgcctggtgctatctggtgcagGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCAATCCGCAGTTAGAACAGTAATTCATGTACCTTTGCTTGTGATTGGCATTGACGTGAGAACC
- - - aaaacaa
- - - - - - -ccatgtt
- - - - - - - - - - ttgtatg
- - - - - - - - - - - - - -aaccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcta