1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatgcagggtgtgatgtggtgttacatgtgcagtaatatatgcgcgtgtgtctgccgtgtaataagaaaaatatttaactgaaaccctcgccaattgcagGACAGGACGAGTGGAGATTGGTGGGTGTACTATGGCTTCAACAGTGTTCCCACGGGGGTGGGCTCTTACCCAAAATCTCTGTTCACTAATATGGCAGAGA
species | Oryza sativa |
transcript | 13113.m00211 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
gtgtgtctgccgtgtaataagaaaaatatttaactgaaaccctcgccaattgcagGACAGGACGAGTGGAGATTGGTGGGTGTACTATGGCTTCAACAGTGTTCCCACGGGGGTGGGCTCTTACCCAAAATCTCTGTTCACTAATATGGCAGAGA
atttaac putative branch site (score: 3)
ccctcgcc putative PPT
tgtaataagaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcagggtgtgatgtggtgttacatgtgcagtaatatatgcgcgtgtgtctgccgtgtaataagaaaaatatttaactgaaaccctcgccaattgcagGACAGGACGAGTGGAGATTGGTGGGTGTACTATGGCTTCAACAGTGTTCCCACGGGGGTGGGCTCTTACCCAAAATCTCTGTTCACTAATATGGCAGAGA
-atgcagg
- - - - - - - tgtggtg
- - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - - -gtgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata