1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttattatatataactaacacccttcccattttctttcgctgaccaaaaacattaaaaggtatcttgctataatgtggtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGATGACAAAGTGTAAGAGG
species | Oryza sativa |
transcript | LOC_Os12g44000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88661438|gb|CI455114.1|CI455114
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88547046|gb|CI477317.1|CI477317
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTNCCGCAATGGGAGGEST: gi|163920049|gb|EG709843.1|EG709843
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|13896698|gb|AU183034.1|AU183034
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88555102|gb|CI485335.1|CI485335
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTGTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|8857593|gb|AU094911.1|AU094911
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88541762|gb|CI471050.1|CI471050
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88375124|gb|CI523389.1|CI523389
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|58593809|gb|CF992117.1|CF992117
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGGTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88521140|gb|CI448799.1|CI448799
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88237642|gb|CI237491.1|CI237491
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAACGGGAGGEST: gi|88661342|gb|CI452697.1|CI452697
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88466336|gb|CI529745.1|CI529745
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88536272|gb|CI466013.1|CI466013
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|8857008|gb|AU094326.1|AU094326
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88528856|gb|CI457128.1|CI457128
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|86822411|gb|CI357963.1|CI357963
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGC-AAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|5851049|gb|AU078221.1|AU078221
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|8856902|gb|AU094220.1|AU094220
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|88549272|gb|CI479148.1|CI479148
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGEST: gi|86888775|gb|CI307833.1|CI307833
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
EST: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAG CAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
genomic: GTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatat ... gtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGG
tctttcgctgaccaaaaacattaaaaggtatcttgctataatgtggtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGATGACAAAGTGTAAGAGG
cgctgac putative branch site (score: 3)
aaaaacattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattatatataactaacacccttcccattttctttcgctgaccaaaaacattaaaaggtatcttgctataatgtggtgtttgcagCAACGCCCTCAAGACAATGACCGCTATGTTAGGAATTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGATGACAAAGTGTAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG