1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catatatttgaccaatgcttggtccaaattttaacgttctaaataagctctgatgagtttgagctacctaccttactcatgctaccttctttccctgcagAATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGCCTTATAGCATTTAGAGGTCATGTTCATCCTATTGATCCATCATGGCATC
species | Oryza sativa |
transcript | LOC_Os12g38930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATTGGGTCAGGGAG AATCTGAGCTCAAAACTTCACACTTTTGGAGGCTTGGAACATTACCACCTGEST: gi|2309924|gb|C26079.1|C26079
genomic: CCATTGGGTCAGGGAGgtaaaacatc ... ttccctgcagAATCTGAGCTC-AAACTTCACAC-TTTGGAGGCTTGGAACATTACCACCTG
EST: GGAGAAAGACATCCATTAAAAGATAAAATACCACCATTNGGGTCAGGGAG AATCTGAGCTCAAACTEST: gi|33692988|gb|CF321227.1|CF321227
genomic: GGAGAAAGACATCCATTAAA-GATAAA-TACCACCATT-GGGTCAGGGAGgtaaaacatc ... ttccctgcagAATCTGAGCTCAAACT
EST: CATTGTGAAAGACATCCATTAAAGATAAATACCACCATTGGGTCAGGGAG AATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGCEST: gi|27576121|gb|CA998815.1|CA998815
genomic: CATGGAGAAAGACATCCATTAAAGATAAATACCACCATTGGGTCAGGGAGgtaaaacatc ... ttccctgcagAATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGC
EST: CATGGAGAAAGACATCCATTAAAGATAAATACCACCATTGGGTCAGGGAG AATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGCEST: gi|89193616|gb|CI116249.1|CI116249
genomic: CATGGAGAAAGACATCCATTAAAGATAAATACCACCATTGGGTCAGGGAGgtaaaacatc ... ttccctgcagAATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGC
EST: CATGGAGAAAGACATCCATTAAAGATAAATACCACCATTGGGTCAGGGAG AATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGC
genomic: CATGGAGAAAGACATCCATTAAAGATAAATACCACCATTGGGTCAGGGAGgtaaaacatc ... ttccctgcagAATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGC
agctctgatgagtttgagctacctaccttactcatgctaccttctttccctgcagAATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGCCTTATAGCATTTAGAGGTCATGTTCATCCTATTGATCCATCATGGCATC
accttac putative branch site (score: 6)
ctcatgctaccttctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatatttgaccaatgcttggtccaaattttaacgttctaaataagctctgatgagtttgagctacctaccttactcatgctaccttctttccctgcagAATCTGAGCTCAAACTTCACACTTTGGAGGCTTGGAACATTACCACCTGGCCTTATAGCATTTAGAGGTCATGTTCATCCTATTGATCCATCATGGCATC
- - - - - - - atgcttg
- - - - - - - - - - - - - - - - - - - - - - - - -ctgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctacct