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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaccctgcgttctgttttatcttttacttgattttttttatttgaaatttgaaaaaaattgtggccacacgttttcttttttcttgggaaagtcaagcactcaagttctttttctgaaggatttaccccctttctgtgttatctgtctaatgttgacataaattttgcagCTAAAGCGCCACTCCTTGCATATAATAGTTTCATAGAAGCTATCTATGTCCTAAACAATTGCTTGGGTAATGGTGCGCAAACCGAATCTCAGGGAAGGTT

Basic information

species Oryza sativa
transcript LOC_Os12g36170.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g36170.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G571844_T01 (Zea mays), 3'ss of exon 4
gtttaccctgcgttctgttttatcttttacttgattttttttatttgaaatttgaaaaaaattgtggccacacgttttcttttttcttgggaaagtcaagcactcaagttctttttctgaaggatttacc--ccctttctgtgttatctgtctaatgttgacataaattttgcagCTAAAGCGCCACTCCTTGCATATAATAGTTTCATAGAAGCTATCTATGTCCTAAACAATTGCTTGGGTAATGGTGCGCAAACCGAATCTCAGGGAAGGTT
                                                                             | ||| || |||        || |  |    ||||| || | |   | | ||   |   | |   || | |||  |||  |   | ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||| |||||| |||||   ||  ||||||   | | ||| ||||||     |  
----------------------------------------------------------------------------gtatttatttttg----tactaaacttt----ttcttgttttaagcaactgactaacatgtcccaagtca-ctgattaacatctgcttaaattttgcagCTAAAGCGCCACTTCTTGCATACAATAGTTTCATTGAAGCTATATATGTTCTAAACGATTGCACTGGACATGGTGTATATAGCGACTCTCAGTCTCAGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaggatttaccccctttctgtgttatctgtctaatgttgacataaattttgcagCTAAAGCGCCACTCCTTGCATATAATAGTTTCATAGAAGCTATCTATGTCCTAAACAATTGCTTGGGTAATGGTGCGCAAACCGAATCTCAGGGAAGGTT
                                   tgttgac  putative branch site (score: 3)
                                     ttgacataaatttt  TA-rich tract