1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aatatcaaacccagacaatctgtatcctccctttcttacgttccttactccctttttcttgaattaatgtgtgattcatgtctgcgacttcattttgcagGAGAGATTTTGTGAGATTTGCAGACTTCTGCTTCAAGACATATGGTCATAAGGTGAAGAACTGGTTTACCATTAACGAACCTAGGATGATGGCAAATCAT
species | Oryza sativa |
transcript | LOC_Os12g23170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCTACACCCCAGAATTGT GAGAGATTTTGTGAGATATGCGGACTTCTGCTTCAAGACATATGGTCATAAEST: gi|55409077|gb|CV721453.1|CV721453
genomic: TGGCTACACCCCAGAATTGTgtaagtgttc ... cattttgcagGAGAGATTTTGTGAGATTTGCAGACTTCTGCTTCAAGACATATGGTCATAA
EST: CCACAGGTGCTCCATGATCAATACAAGGGATGGCTACACCCCAGAATTGT GAGAGATTTTGTGAGATTTGCAGACTTCTGCTTCAAGACATATGGTCATAAEST: gi|13896042|gb|AU182378.1|AU182378
genomic: CCACAGGTGCTCCATGATCAATACAAGGGATGGCTACACCCCAGAATTGTgtaagtgttc ... cattttgcagGAGAGATTTTGTGAGATTTGCAGACTTCTGCTTCAAGACATATGGTCATAA
EST: CCACAGGTGCTCCATGANCAATACAAGGGATGGCTACACCCCAGAATTGT GAGAGATTTTGTGAGATTTGCAGACTTCTGCTTCAAGACATATGGTCATAA
genomic: CCACAGGTGCTCCATGATCAATACAAGGGATGGCTACACCCCAGAATTGTgtaagtgttc ... cattttgcagGAGAGATTTTGTGAGATTTGCAGACTTCTGCTTCAAGACATATGGTCATAA
tactccctttttcttgaattaatgtgtgattcatgtctgcgacttcattttgcagGAGAGATTTTGTGAGATTTGCAGACTTCTGCTTCAAGACATATGGTCATAAGGTGAAGAACTGGTTTACCATTAACGAACCTAGGATGATGGCAAATCAT
cttcatttt CT-rich tract
tttttcttgaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatcaaacccagacaatctgtatcctccctttcttacgttccttactccctttttcttgaattaatgtgtgattcatgtctgcgacttcattttgcagGAGAGATTTTGTGAGATTTGCAGACTTCTGCTTCAAGACATATGGTCATAAGGTGAAGAACTGGTTTACCATTAACGAACCTAGGATGATGGCAAATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - aaaccca
- - - - - - - - - - - - -cctccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgc