1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtgtgtgtgtgtgtgtgtgtttggggaggggggggggagtggggttctgtaatattgctattcttgaaggaagcattcatgaattcattgaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
species | Oryza sativa |
transcript | LOC_Os12g19350.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAEST: gi|58695843|gb|CK084530.1|CK084530
genomic: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
EST: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAEST: gi|218496318|gb|FG954188.1|FG954188
genomic: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
EST: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAEST: gi|3767294|gb|AU031404.1|AU031404
genomic: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
EST: GATGAATGGTTTGTGGTGNNGGTGATACATTTCGATAAGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAEST: gi|86428812|gb|CI075493.1|CI075493
genomic: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
EST: AGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAEST: gi|88974062|gb|CI002724.1|CI002724
genomic: AGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
EST: TACATTTCGATAAGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGNCAGGTGACGATGAAGAGAGTGCCCAAAAEST: gi|88296152|gb|CI667542.1|CI667542
genomic: TACATTTCGATAAGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
EST: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAEST: gi|29685641|gb|CB681916.1|CB681916
genomic: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
EST: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAAEST: gi|88839574|gb|CI005362.1|CI005362
genomic: GATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
EST: TACATTTCGATAAGGAAACAAAAGA ATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
genomic: TACATTTCGATAAGGAAACAAAAGAgtatgtctta ... gaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
ttctgtaatattgctattcttgaaggaagcattcatgaattcattgaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
aattcattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtgtgtgtgtgtgtgtgtttggggaggggggggggagtggggttctgtaatattgctattcttgaaggaagcattcatgaattcattgaatttgcagATATGAGGTACTTGATGAGGAGCCAGGTGACGATGAAGAGAGTGCCCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - -gtgtttg
- - - - - - - - - - - - - - - - - - - - - -ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattca