1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgtaccagctggcatactgcctgttacaaaatagaagtcctattggatcactattgagccttttgatgcaattaaatctcttgcatcctactctgcagGATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAATATATTGTCCCA
species | Oryza sativa |
transcript | LOC_Os12g18200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ANNNNNNNAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAG GATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAATEST: gi|25803541|gb|CA759502.1|CA759502
genomic: ATTTTTTTAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAGgtaacattac ... tactctgcagGATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAAT
EST: CATCCCTCCAAAT-AAGAAG GATTGTGG-CAACCAGGATTCACCCTGTCAGA-AAGCGGGGGCTTCGGCAEST: gi|27547884|gb|CA765936.2|CA765936
genomic: CATCCCTCCAAATAAAG-AGgtaacattac ... tactctgcagGATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGC-GGCGCTTCGGCA
EST: ANNNNNNNAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAG GATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAATEST: gi|86494667|gb|CI137300.1|CI137300
genomic: ATTTTTTTAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAGgtaacattac ... tactctgcagGATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAAT
EST: ANNNNNNNAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAG GATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAAT
genomic: ATTTTTTTAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAGgtaacattac ... tactctgcagGATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAAT
tggatcactattgagccttttgatgcaattaaatctcttgcatcctactctgcagGATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAATATATTGTCCCA
ttttgat putative branch site (score: 3)
tcctactct putative PPT
aattaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtaccagctggcatactgcctgttacaaaatagaagtcctattggatcactattgagccttttgatgcaattaaatctcttgcatcctactctgcagGATTGTGGACAGCCAGGATTCACCCTGTCAGAGAGGCGGCGCTTCGGCAATATATTGTCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - ccagctg
- - - - - - - - tactgcc
- - - - - - - - - - - - - tacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgca