1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gggatcaacagttcatagcatgccagccttttattttattactggataaatactgaacctgctcgtcgctaagttatttttatttttcattgaagaacagAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTATTGACCTACAAGAGCAACTGCAAAGCAATGCTGACAGCTGTTGGTGATT
species | Oryza sativa |
transcript | LOC_Os12g13460.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAG AAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTAEST: gi|38470357|gb|CF954488.1|CF954488
genomic: TCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAGgtaacataat ... tgaagaacagAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTA
EST: TCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAG AAAGTTAGTTTAGCTCGAEST: gi|29657714|gb|CB653989.1|CB653989
genomic: TCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAGgtaacataat ... tgaagaacagAAAGTTAGTTTAGCTCGA
EST: TCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAG AAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTAEST: gi|33676615|gb|CF304854.1|CF304854
genomic: TCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAGgtaacataat ... tgaagaacagAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTA
EST: TCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAG AAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTA
genomic: TCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAGgtaacataat ... tgaagaacagAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTA
ataaatactgaacctgctcgtcgctaagttatttttatttttcattgaagaacagAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTATTGACCTACAAGAGCAACTGCAAAGCAATGCTGACAGCTGTTGGTGATT
tttttatttttcatt CT-rich tract
taagttatttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggatcaacagttcatagcatgccagccttttattttattactggataaatactgaacctgctcgtcgctaagttatttttatttttcattgaagaacagAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTATTGACCTACAAGAGCAACTGCAAAGCAATGCTGACAGCTGTTGGTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -atcaaca
- - - - - - - - agcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - tactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgctc