Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtaatatatatgcactaagagtatatacatataatcatggctcgactaacaatttcgtttgcagCGACCATTGGATAGTCTTTCTTCTCTATCCAAAGTACAATGAAGTCATCATCTTGGATTCTCTCGACAAAGATAGCAACACCTATCAGGAATTTCTAAGA

Basic information

species Oryza sativa
transcript LOC_Os12g13020.1
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcactaagagtatatacatataatcatggctcgactaacaatttcgtttgcagCGACCATTGGATAGTCTTTCTTCTCTATCCAAAGTACAATGAAGTCATCATCTTGGATTCTCTCGACAAAGATAGCAACACCTATCAGGAATTTCTAAGA
                                  gactaac  putative branch site (score: 1)
                                           tttcgttt  putative PPT
            tatatacatataatca  TA-rich tract