1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attgttacttctgaagtctatgaattaaggaacagcatttgaccttatgtgataacttcaaccttgggtagtccttgatatcacttttgttttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGGTGTACACTAGCGTACATGGGCAGATGATCAAGAGTGTTGCCATCTCTT
species | Oryza sativa |
transcript | LOC_Os12g10560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAEST: gi|88244598|gb|CI243720.1|CI243720
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATA
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCCAAAGG GCCATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|88244271|gb|CI243393.1|CI243393
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|8404493|gb|AU091847.1|AU091847
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|88238097|gb|CI237946.1|CI237946
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|88987133|gb|CI034174.1|CI034174
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|33689088|gb|CF317327.1|CF317327
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|88262894|gb|CI364472.1|CI364472
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: AGTGGATGAGGTTATTCTCGCCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|88476675|gb|CI413946.1|CI413946
genomic: ATTGGATGAGTTTATTCTCG-CTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: CTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|88995546|gb|CI022869.1|CI022869
genomic: CTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|33669785|gb|CF298024.1|CF298024
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|87015947|gb|CI279699.1|CI279699
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|88491736|gb|CI429008.1|CI429008
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|58683184|gb|CK071871.1|CK071871
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|33693746|gb|CF321985.1|CF321985
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAEST: gi|33659105|gb|CF281718.1|CF281718
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGA
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|33689089|gb|CF317328.1|CF317328
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|33693747|gb|CF321986.1|CF321986
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|38478254|gb|CF962387.1|CF962387
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|86878703|gb|CI340589.1|CI340589
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|33663155|gb|CF294122.1|CF294122
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGEST: gi|88238521|gb|CI238370.1|CI238370
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
EST: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGG GCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
genomic: TATTGGATGAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGgtacatcttt ... tttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACG
tatgtgataacttcaaccttgggtagtccttgatatcacttttgttttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGGTGTACACTAGCGTACATGGGCAGATGATCAAGAGTGTTGCCATCTCTT
tcacttttgttttctt CT-rich tract
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgttacttctgaagtctatgaattaaggaacagcatttgaccttatgtgataacttcaaccttgggtagtccttgatatcacttttgttttctttcagGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGAATAAGAAGAAACGGTGTACACTAGCGTACATGGGCAGATGATCAAGAGTGTTGCCATCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - acttctg
- - - - - - - - - - - - - - - aacagca
- - - - - - - - - - - - - - - - - - - - - - - -tgtgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccttg