1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgaatgattgtattatttaatattttggtaaaccggcaaaaaaaccttatgtgaccagatttttggggaacttctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTCTACAGGAGCTGAAGAGACGCATAGAGAGTGAAACAGGAACTACACTTCC
species | Oryza sativa |
transcript | LOC_Os12g07020.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAG GGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTCEST: gi|86493355|gb|CI135988.1|CI135988
genomic: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAGgtatgaatga ... ctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTC
EST: CAAATACCACGATCGCGAAACCACAAG GGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTCEST: gi|86848842|gb|CI295675.1|CI295675
genomic: CAAATACCACGATCGCGAAACCACAAGgtatgaatga ... ctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTC
EST: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAG GGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTCEST: gi|86503583|gb|CI146216.1|CI146216
genomic: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAGgtatgaatga ... ctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTC
EST: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAG GGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTCEST: gi|29658507|gb|CB654782.1|CB654782
genomic: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAGgtatgaatga ... ctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTC
EST: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAG GGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTCEST: gi|86493868|gb|CI136501.1|CI136501
genomic: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAGgtatgaatga ... ctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTC
EST: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAG GGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTC
genomic: CACTCCAACTCAGGTCATATTCACAAATACCACGATCGCGAAACCACAAGgtatgaatga ... ctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTC
taaaccggcaaaaaaaccttatgtgaccagatttttggggaacttctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTCTACAGGAGCTGAAGAGACGCATAGAGAGTGAAACAGGAACTACACTTCC
cttctgc CT-rich tract
aaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatgattgtattatttaatattttggtaaaccggcaaaaaaaccttatgtgaccagatttttggggaacttctgcatgcagGGATTTACTGGGAAAAGTTATCTCCAGAGAAATTGGGCCAAATCCGAATTCTACAGGAGCTGAAGAGACGCATAGAGAGTGAAACAGGAACTACACTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA