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gtatattatccagcactatgcttttctgtggaactactcattttatcccttttgttttacatgtttttttttattctctgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGACCTTGATTCTTCTCTTGCTCCTGTGGCCAAATCTGTAGATGCAAAAGAGG
species | Oryza sativa |
transcript | LOC_Os12g06810.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCGCCAGCATTCCGATTATGTGATTTGTCTTGCTGCATCTGNNNNNNNT AGCAATATTGTTGCCTCTGGTGGCCTTGGTGGTGAGGTCTTTATATGGGACEST: gi|87023589|gb|CI286340.1|CI286340
genomic: TCCGCCAGCATTCCGATTATGTGATTTGTCTTGCTGCATCTGAAAAAAATgtatattatc ... tgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGAC
EST: TCCGCCAGCATTCCGATTATGTGATTTGTCTTGCTGCATCTGNNNNNNNT AGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGACEST: gi|29666968|gb|CB663243.1|CB663243
genomic: TCCGCCAGCATTCCGATTATGTGATTTGTCTTGCTGCATCTGAAAAAAATgtatattatc ... tgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGAC
EST: TCCGCCAGCATTCCGATTATGTGATTTGTCTTGCTGCATCTGNNNNNNNT AGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGACEST: gi|29678629|gb|CB674904.1|CB674904
genomic: TCCGCCAGCATTCCGATTATGTGATTTGTCTTGCTGCATCTGAAAAAAATgtatattatc ... tgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGAC
EST: TCCGCCAGCATTCCGATTATGTGATTTGTCTTGCTGCATCTGNNNNNNNT AGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGAC
genomic: TCCGCCAGCATTCCGATTATGTGATTTGTCTTGCTGCATCTGAAAAAAATgtatattatc ... tgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGAC
ctactcattttatcccttttgttttacatgtttttttttattctctgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGACCTTGATTCTTCTCTTGCTCCTGTGGCCAAATCTGTAGATGCAAAAGAGG
tcccttttgttttaca CT-rich tract
ttttgttttacatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattatccagcactatgcttttctgtggaactactcattttatcccttttgttttacatgtttttttttattctctgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGACCTTGATTCTTCTCTTGCTCCTGTGGCCAAATCTGTAGATGCAAAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG