1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...attggttcttgcagcatgaaggataatgtagtatgctttatcatggtgatttctttctccatttggtgactgcaaagtaataatggcatttaatatgcagATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTATTAACCTCTAGGGAAATGCTACTCGAAGAACTAAAGAAAATCAGTGATG
species | Oryza sativa |
transcript | LOC_Os12g06800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTTACATATCGTGTACCTCAAAGCTGGTGCAACTAAATCATCATTGAAG ATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTAEST: gi|58653490|gb|CK042170.1|CK042170
genomic: CTTTACATATCGTGTACCTCAAAGCTGGTGCAACTAAATCATCATTGAAGgtacacaggt ... taatatgcagATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTA
EST: CTTTACATATCGTGTACCTCAAAGCTGGTGCAACTAAATCATCATTGAAG ATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTAEST: gi|58662681|gb|CK051367.1|CK051367
genomic: CTTTACATATCGTGTACCTCAAAGCTGGTGCAACTAAATCATCATTGAAGgtacacaggt ... taatatgcagATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTA
EST: CTTTACATATCGTGTACCTCAAAGCTGGTGCAACTAAATCATCATTGAAG ATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTAEST: gi|58667626|gb|CK056312.1|CK056312
genomic: CTTTACATATCGTGTACCTCAAAGCTGGTGCAACTAAATCATCATTGAAGgtacacaggt ... taatatgcagATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTA
EST: CTTTACATATCGTGTACCTCAAAGCTGGTGCAACTAAATCATCATTGAAG ATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTA
genomic: CTTTACATATCGTGTACCTCAAAGCTGGTGCAACTAAATCATCATTGAAGgtacacaggt ... taatatgcagATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTA
gtgatttctttctccatttggtgactgcaaagtaataatggcatttaatatgcagATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTATTAACCTCTAGGGAAATGCTACTCGAAGAACTAAAGAAAATCAGTGATG
atttaat putative branch site (score: 12)
aaagtaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggttcttgcagcatgaaggataatgtagtatgctttatcatggtgatttctttctccatttggtgactgcaaagtaataatggcatttaatatgcagATACCAGACCAAGGTTTAGGACCAACATCGCATCACATTGTGAAGGCATTATTAACCTCTAGGGAAATGCTACTCGAAGAACTAAAGAAAATCAGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - tcttgca
- - - - - - -gcatgaa
- - - - - - - - - - - - - - -agtatgc
- - - - - - - - - - - - - - - - - - - - -catggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcatt