1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtcagtgcctttgctctcaatactgggacaggagaacaaggatgtctgcccattcccattagttgaaagaattatattgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAAGGAACAAATAGAACCTCAAGGCTTCAAATAACAACTACCAAGAAGGGA
species | Oryza sativa |
transcript | LOC_Os12g03470.5 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAEST: gi|29624170|gb|CB629181.1|CB629181
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAEST: gi|29624168|gb|CB629179.1|CB629179
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAEST: gi|33677669|gb|CF305908.1|CF305908
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAEST: gi|29667031|gb|CB663306.1|CB663306
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAEST: gi|29630007|gb|CB635016.1|CB635016
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAEST: gi|33675310|gb|CF303549.1|CF303549
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
ggagaacaaggatgtctgcccattcccattagttgaaagaattatattgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAAGGAACAAATAGAACCTCAAGGCTTCAAATAACAACTACCAAGAAGGGA
attagttgaaagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgcctttgctctcaatactgggacaggagaacaaggatgtctgcccattcccattagttgaaagaattatattgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAAAGGAACAAATAGAACCTCAAGGCTTCAAATAACAACTACCAAGAAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG