1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactcatttgttgtaatgatgaaaatcatacataattttagagtatagtactaactgttcttatttcagATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGTTACTGCGCATGCGAGGAGCCATTCACCAGGATGATGGTGTTCGAGTATG
species | Oryza sativa |
transcript | LOC_Os12g01510.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTCTGCACAACAATGGTCTGCTCGGTCTGAGGAGCAATTCAGGAACAAG ATCTCGGTGCTATCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGTEST: gi|58587574|gb|CF985882.1|CF985882
genomic: ACTCTTCACAACAATGGTCAGCTCAGTCTGAGGAGCAATTCAGGAACAAGgtactcattt ... cttatttcagATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGT
EST: GTCAGCTCAGTCTGAGGAGCAATTCAGGAACAAG ATCTCGGGGCGGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGTEST: gi|58609301|gb|CK037334.1|CK037334
genomic: GTCAGCTCAGTCTGAGGAGCAATTCAGGAACAAGgtactcattt ... cttatttcagATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGT
EST: ACTCTTCACAACAATGGTCAGCTCAGTCTGAGGAGCAATTCAGGAACAAG ATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGTEST: gi|29621673|gb|CB626684.1|CB626684
genomic: ACTCTTCACAACAATGGTCAGCTCAGTCTGAGGAGCAATTCAGGAACAAGgtactcattt ... cttatttcagATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGT
EST: ACTCTTCACAACAATGGTCAGCTCAGTCTGAGGAGCAATTCAGGAACAAG ATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGT
genomic: ACTCTTCACAACAATGGTCAGCTCAGTCTGAGGAGCAATTCAGGAACAAGgtactcattt ... cttatttcagATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGT
aatgatgaaaatcatacataattttagagtatagtactaactgttcttatttcagATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGTTACTGCGCATGCGAGGAGCCATTCACCAGGATGATGGTGTTCGAGTATG
tactaac putative branch site (score: 6)
ttcttatttc putative PPT
tgaaaatcatacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcatttgttgtaatgatgaaaatcatacataattttagagtatagtactaactgttcttatttcagATCTCGGTGCTGTCCAGAGTGAACCATAAGAACTTCATGAACCTGATTGGTTACTGCGCATGCGAGGAGCCATTCACCAGGATGATGGTGTTCGAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG