1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatcaatttctggttttttttcactcactattttctttacttcgtgtaacaattcttcggggttcgaattattctgaaagtagtttcttattgcctttcagGGTATCACCATGTTTCAGAAGAGGATGTGGAAGAATCTTCAACAGGTCTTACATTAAAGAACAAATGGGAGGATACTCACTGGTTTTCTATTTGGTGGCA
species | Oryza sativa |
transcript | LOC_Os11g43860.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATGAGGATATTGTGGATATATTCTCAGCGCATTCTTACAGTAATGAAG GGTATCACCATGTTTCAGAAGAGGATGTGGAAGAATCTTCAACAGGTCTTA
genomic: GAATGAGGATATTGTGGATATATTCTCAGCGCATTCTTACAGTAATGAAGgtaatcaatt ... tgcctttcagGGTATCACCATGTTTCAGAAGAGGATGTGGAAGAATCTTCAACAGGTCTTA
taacaattcttcggggttcgaattattctgaaagtagtttcttattgcctttcagGGTATCACCATGTTTCAGAAGAGGATGTGGAAGAATCTTCAACAGGTCTTACATTAAAGAACAAATGGGAGGATACTCACTGGTTTTCTATTTGGTGGCA
gtgtaac putative branch site (score: 7)
tttcttattgcctttc putative PPT
aattattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcaatttctggttttttttcactcactattttctttacttcgtgtaacaattcttcggggttcgaattattctgaaagtagtttcttattgcctttcagGGTATCACCATGTTTCAGAAGAGGATGTGGAAGAATCTTCAACAGGTCTTACATTAAAGAACAAATGGGAGGATACTCACTGGTTTTCTATTTGGTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG