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gttgggaactgaaaaactgttaaatgttcttttgcaattattgttctgtactgtctgtgtacatgtgaatctgagttattaaaattgagctttgctgatgtctgttcattcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC
species | Oryza sativa |
transcript | LOC_Os11g40510.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|86897973|gb|CI290697.1|CI290697
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|87012285|gb|CI293335.1|CI293335
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|87006051|gb|CI289468.1|CI289468
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|58602505|gb|CK013033.1|CK013033
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|58681227|gb|CK069914.1|CK069914
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAAGTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|86905007|gb|CI289154.1|CI289154
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|88321854|gb|CI672999.1|CI672999
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|58678674|gb|CK067361.1|CK067361
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: ATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCGAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTEST: gi|58690866|gb|CK079553.1|CK079553
genomic: ATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATC-AGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCT
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|87022688|gb|CI293578.1|CI293578
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|58694246|gb|CK082933.1|CK082933
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|25797088|gb|CA753049.1|CA753049
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: ATTTAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|58606512|gb|CK034545.1|CK034545
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGEST: gi|58601763|gb|CK012291.1|CK012291
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
EST: ATAAAAGTCAA-TGGGCATATGCAAGTACTCAAAGAGAGGATACATCGAG GCCATTTTAATATTTTTG-TGGCGATC-TTGCCCGGAAGTAACAGATGCTEST: gi|86596642|gb|CI286555.1|CI286555
genomic: ATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATC-AGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCT
EST: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAG GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
genomic: AATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaact ... attcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTG
atgtgaatctgagttattaaaattgagctttgctgatgtctgttcattcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC
tgctgat putative branch site (score: 3)
ttcattctt putative PPT
tgagttattaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgggaactgaaaaactgttaaatgttcttttgcaattattgttctgtactgtctgtgtacatgtgaatctgagttattaaaattgagctttgctgatgtctgttcattcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA