1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatatacgtttgccagtgaatttcttttatttgtatgatgtagtgttactgtatatttactcacaatttatctgttatttccccagGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATATTGGATGAACCAACAAATCACCTTGATATTCCATCGAAAGAAATGCTTG
species | Oryza sativa |
transcript | LOC_Os11g39020.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGNNN NCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACNNNATTGATAEST: gi|29676179|gb|CB672454.1|CB672454
genomic: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAGgtaatatacg ... atttccccagGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATA
EST: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAG GCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATAEST: gi|33798171|gb|CF324944.1|CF324944
genomic: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAGgtaatatacg ... atttccccagGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATA
EST: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAG GCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATAEST: gi|87006701|gb|CI285735.1|CI285735
genomic: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAGgtaatatacg ... atttccccagGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATA
EST: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAG GCGAGGCTTGCCTTCTGCAAGTTCTGGGTGACTCCATCTACTTTATGGATAEST: gi|29625501|gb|CB630512.1|CB630512
genomic: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAGgtaatatacg ... atttccccagGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATA
EST: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAG GCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATA
genomic: GGGATGATATGTTGGATAGAAAGGTTCAATTCTTAAGTGGTGGAGAGAAGgtaatatacg ... atttccccagGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATA
tgtatgatgtagtgttactgtatatttactcacaatttatctgttatttccccagGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATATTGGATGAACCAACAAATCACCTTGATATTCCATCGAAAGAAATGCTTG
tactcac putative branch site (score: 23)
tctgttatttcccc putative PPT
aatttatctgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatacgtttgccagtgaatttcttttatttgtatgatgtagtgttactgtatatttactcacaatttatctgttatttccccagGCGAGGCTTGCCTTCTGCAAGTTCTTGGTGACTCCATCTACTTTATTGATATTGGATGAACCAACAAATCACCTTGATATTCCATCGAAAGAAATGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA