Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactactatccctgattttcaggcaaccatctgcctatcagttcatcgccccgaattcatgcattctgatcattcatcggaaacttgattcttgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAGAAGGCCGAGGGCGTCGACTTGTCGGCCTACGGGTCATCCAAGGTAGTGC

Basic information

species Oryza sativa
transcript LOC_Os11g37890.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g37890.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 6
gtactactatccctgattttcaggcaaccatctgccta-tcagttcatcgccccgaattcatgcattctgatcattcatcgga---aacttgattcttgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAGAAGGCCGAGGGCGTCGACTTGTCGGCCTACGGGTCATCCAAGGTAGTGC
    ||||   ||  |  |       ||||||   | | ||  |     |   |  |   |   | ||||||| ||||| | |    |||  | | | ||   |||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| | ||  |||||| |||||| ||||||||||| ||||
---gtactccaccaaacctcgcacgtaccatcgctccagtccctgagctggatcacacctacatagtctgatcgttcattgcactggactcaaatttggcc-tgcagGACGGGCTGAGGATCACGTACTCCTGGATCAAGGAGCAGCTTGAGAAGGAGAAGGCCGAGGGCATGGATCTGTCGGTCTACGGATCATCCAAGGTCGTGC

upper sequence: LOC_Os11g37890.3 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv14s0030g02180.t01 (Vitis vinifera), 3'ss of exon 6
gtactactatccctgattttcaggcaaccatctgcctatcagttcatcgccccgaattcatgca---ttctgatcattcatcggaaacttgattct--tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAGAAGGCCGAGGGCGTCGACTTGTCGGCCTACGGGTCATCCAAGGTAGTGC
         ||  |||  ||||   |  |||      || | ||  | |||  |  ||| ||||   | ||  | | |||    | | |||| |||  ||    | ||||||| ||||| || |||||||||||||||||||| ||| | ||||| ||||| |   ||||| | ||  ||||    || |||||||||||||| ||| 
------aagtcattgaagttca--tagtcatgccttgatgatttacttgcctagttttcctgcaacttcctatttaatcaagccatatttgaatctactgttctgtagGATGGGCTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAGAAAGTTAAGGGCATTGATCTGTCTATTTATGGGTCATCCAAGGTGGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88283735|gb|CI405181.1|CI405181
EST:     CTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: CTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|29674223|gb|CB670498.1|CB670498
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88832887|gb|CI369777.1|CI369777
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|86870984|gb|CI326803.1|CI326803
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|7212646|gb|AU082949.1|AU082949
EST:     ACACGCTCATCAAAGAGAAGCTTGGNTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTNTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88470498|gb|CI407769.1|CI407769
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88267645|gb|CI379580.1|CI379580
EST:     GCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: GCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88997221|gb|CI389887.1|CI389887
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|29661001|gb|CB657276.1|CB657276
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88833428|gb|CI076909.1|CI076909
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88509682|gb|CI437188.1|CI437188
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|29642084|gb|CB647091.1|CB647091
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88479074|gb|CI416345.1|CI416345
EST:     AGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: AGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88491049|gb|CI428321.1|CI428321
EST:     CTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: CTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|86430583|gb|CI083006.1|CI083006
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|86428254|gb|CI074935.1|CI074935
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88840027|gb|CI079481.1|CI079481
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|86426172|gb|CI071269.1|CI071269
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88216965|gb|CI216669.1|CI216669
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|86841064|gb|CI342848.1|CI342848
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTGTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88455588|gb|CI521808.1|CI521808
EST:     GCTGGGCTCCAACCATGAGGCTNAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: GCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88737391|gb|CI760899.1|CI760899
EST:     ACACGCTCATCAAAGAGAAGCCTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88470497|gb|CI407768.1|CI407768
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|86503196|gb|CI145829.1|CI145829
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCCAAGGAGCAGCTCGAGAAGGA
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATC-AAGGAGCAGCTCGAGAAGGA
EST: gi|88490463|gb|CI427735.1|CI427735
EST:     ACGCTCATCAAAGAGAAGGCTTGGCTGGGGCTCCAACCATGAGGGTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGACCAGCTCGAGAAGGAG
genomic: ACGCTCATCAAAGAGAA-GCTTGGCT-GGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88273947|gb|CI394353.1|CI394353
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|29674224|gb|CB670499.1|CB670499
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|87010192|gb|CI279289.1|CI279289
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88244897|gb|CI242748.1|CI242748
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88477109|gb|CI414380.1|CI414380
EST:     AGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: AGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88320206|gb|CI520750.1|CI520750
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88283183|gb|CI404629.1|CI404629
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88969661|gb|CI383164.1|CI383164
EST:     CCAACCATGAGGCTGAAG                         GAT-GTCTGAGGATCACATACTTCTGGATCAAGGAACAGCTCGAGAAGGAG
genomic: CCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88220146|gb|CI219706.1|CI219706
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|86598999|gb|CI355616.1|CI355616
EST:     CTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: CTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88281054|gb|CI402252.1|CI402252
EST:     TTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: TTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88484480|gb|CI421751.1|CI421751
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|8859292|gb|AU096610.1|AU096610
EST:     ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|325493747|gb|JG458271.1|JG458271
EST:     -CACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTC
genomic: ACACGCTCATCAAAGAGAAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTC
EST: gi|86825035|gb|CI358208.1|CI358208
EST:     CCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGACCAGCTCGAGAAGGAG
genomic: CCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
EST: gi|88831633|gb|CI369315.1|CI369315
EST:     AAGCTTGGCTGGGCTCCAACCATGAGGCTGAAG                         GATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG
genomic: AAGCTTGGCTGGGCTCCAACCATGAGGCTGAAGgtactactat ... tgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccccgaattcatgcattctgatcattcatcggaaacttgattcttgcggcgcagGATGGTCTGAGGATCACATACTTCTGGATCAAGGAGCAGCTCGAGAAGGAGAAGGCCGAGGGCGTCGACTTGTCGGCCTACGGGTCATCCAAGGTAGTGC
                                         ttcttgc  CT-rich tract
      aattcat  TA-rich tract