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...tccacattgcatagcactactcatgtttagttttctattttattctgaacaatgttgtttctgactaacttttgtggcttgtttgtttttgtgcaatcagAACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTTGACACTGCCCAGAGATACGAGCATGCATTTTCAAAGAAGCACCAGACAC
species | Oryza sativa |
transcript | LOC_Os11g33330.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTGATGCGAATGGGAGAAGATCCCCCAGTTGAAGTTTGGGTAGCTGAT AACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATTTCTGTTEST: gi|29636202|gb|CB641211.1|CB641211
genomic: AATTGATGCGAATGGGAGAAGATCCCCCGGTTGAAGTTTGGATAGCTGATgtaagtgttc ... gtgcaatcagAACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTT
EST: AATTGATGCGAATGGGAGAAGATCCCCCGGTTGAAGTTTGGATAGCTGAT AACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTTEST: gi|58694343|gb|CK083030.1|CK083030
genomic: AATTGATGCGAATGGGAGAAGATCCCCCGGTTGAAGTTTGGATAGCTGATgtaagtgttc ... gtgcaatcagAACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTT
EST: TTGAAG-TTGGATAGCTGAT AACCTGTCAGATGAAGCTG-TGTTGGAATTAATCCATGGTGCATCTCTGTTEST: gi|29675275|gb|CB671550.1|CB671550
genomic: TTGAAGTTTGGATAGCTGATgtaagtgttc ... gtgcaatcagAACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTT
EST: AATTGATGCGAATGGGAGAAGATCCCCCGGTTGAAGTTTGGATAGCTGAT AACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTT
genomic: AATTGATGCGAATGGGAGAAGATCCCCCGGTTGAAGTTTGGATAGCTGATgtaagtgttc ... gtgcaatcagAACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTT
tgaacaatgttgtttctgactaacttttgtggcttgtttgtttttgtgcaatcagAACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTTGACACTGCCCAGAGATACGAGCATGCATTTTCAAAGAAGCACCAGACAC
gactaac putative branch site (score: 81)
tttttgt putative PPT
tttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccacattgcatagcactactcatgtttagttttctattttattctgaacaatgttgtttctgactaacttttgtggcttgtttgtttttgtgcaatcagAACCTGTCAGATGAAGCTGTTGTTGGAATTAATCCATGGTGCATCTCTGTTGACACTGCCCAGAGATACGAGCATGCATTTTCAAAGAAGCACCAGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - cattgca
- - - - - - -gcactac
- - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - -attctga
- - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg