1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaatttggtaaggttgaaaatggcatcaaagtgaacaggcccttatacactaatattcccattattttctcataatttatctactttgtttccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTGACCCAAAGGGATCTCAGAAGAAGGAAATGGAAGAA
species | Oryza sativa |
transcript | LOC_Os11g28300.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG TTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTTGGAAGTCTEST: gi|44678067|gb|CR291501.1|CR291501
genomic: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGgtacttattt ... tccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTT-GGAAGTCT
EST: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG TTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTGEST: gi|218479784|gb|FG960708.1|FG960708
genomic: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGgtacttattt ... tccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTG
EST: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG TTTTGTACTTGTTCTTTGGACTACGTTTGTTATCCATTGCTTGGAAGTCTGEST: gi|66912648|gb|CX099496.1|CX099496
genomic: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGgtacttattt ... tccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTG
EST: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG TTTTGTACTTGGTCTTTGGACTACGTATGTTATACATTGCTTGGAAGTCTGEST: gi|58589289|gb|CF987597.1|CF987597
genomic: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGgtacttattt ... tccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTG
EST: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG TTTTGTACTTGTTCTTTGGACTACEST: gi|42592205|gb|CK738691.1|CK738691
genomic: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGgtacttattt ... tccctgctagTTTTGTACTTGTTCTTTGGACTAC
EST: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG TTTTGTACTTGTTCTTTGGACTACGTTGGTTATACATTGCTTGGAAGTCTGEST: gi|33687017|gb|CF315256.1|CF315256
genomic: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGgtacttattt ... tccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTG
EST: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAG TTTTGTACTTGTTCTTTGGACTACGTTTGTTATACA
genomic: GATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGgtacttattt ... tccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACA
tacactaatattcccattattttctcataatttatctactttgtttccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTGACCCAAAGGGATCTCAGAAGAAGGAAATGGAAGAA
cactaat putative branch site (score: 42)
tctactttgtttccct putative PPT
attattttctcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttggtaaggttgaaaatggcatcaaagtgaacaggcccttatacactaatattcccattattttctcataatttatctactttgtttccctgctagTTTTGTACTTGTTCTTTGGACTACGTTTGTTATACATTGCTTGGAAGTCTGACCCAAAGGGATCTCAGAAGAAGGAAATGGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - -catcaaa
- - - - - - - - - - - - - - - - - -caggccc
- - - - - - - - - - - - - - - - - - - - - - - acactaa