1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtgatctcttaaaggtggattcagatacttacaaaagtgcttctcatgaacttatatgaatttgtaataatcctggccatgttttgtgctattattgcagACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAG
species | Oryza sativa |
transcript | LOC_Os11g18990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCAT ACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAEST: gi|25806521|gb|CA762482.1|CA762482
genomic: TTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATgtaagcaata ... attattgcagACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACA
EST: TTAACATGGTGGTTAATAATGGGGCAGCTGCAGGACAAGTTATTTTCCAT ACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAEST: gi|29685687|gb|CB681962.1|CB681962
genomic: TTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATgtaagcaata ... attattgcagACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACA
EST: AGCAGCTGCAGGACAAGTTATTTTCCAT ACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAEST: gi|27549009|gb|CA767600.2|CA767600
genomic: AGCAGCTGCAGGACAAGTTATTTTCCATgtaagcaata ... attattgcagACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACA
EST: TTAACATGGTGGTTAATAATGGGGCAGCTGCAGGACAAGTTATTTTCCAT ACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAEST: gi|29663791|gb|CB660066.1|CB660066
genomic: TTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATgtaagcaata ... attattgcagACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACA
EST: TTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCAT ACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACA
genomic: TTAACATGGTGGTTAATAATGGAGCAGCTGCAGGACAAGTTATTTTCCATgtaagcaata ... attattgcagACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACA
atgaacttatatgaatttgtaataatcctggccatgttttgtgctattattgcagACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAG
ttatatgaatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatctcttaaaggtggattcagatacttacaaaagtgcttctcatgaacttatatgaatttgtaataatcctggccatgttttgtgctattattgcagACCCATTTCCACATAATTCCTCGAAGATCTGGCGACAAGTTGTGGCCTACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - -tacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc