1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttctgatcccctacctattgaatctgaacttccacatttgaacttcgaacctgactgtgatgcatatcgaagagaacatgcagGCCAAGATGTACTCCACAAACTGCAGAATAAGCAAAATGGTGAAATTAATTTTGACATGGACGATGGAGAATTATTTCGAAACTCACATTCTACCAGAAC
species | Oryza sativa |
transcript | LOC_Os11g16290.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTGTTTCCCCTTCCATAGAGCCTGTATTGATGAATGTTGAACACAAAG GCCAAGATGTACTCCACAAACTGCAGAATAAGCAAAATGGTGAAATTAATTEST: gi|29681499|gb|CB677774.1|CB677774
genomic: ATCTGTTTCCCCTTCCATAGAGCCTGTATTGATGAATGTTGAACACAAAGgttctgatcc ... gaacatgcagGCCAAGATGTACTCCACAAACTGCAGAATAAGCAAAATGGTGAAATTAATT
EST: ATCTGTTTCCCCTTCCATAGAGCCTGTATTGATGAATGTTGAACACAAAGAGAACATGCAGEST: gi|29627495|gb|CB632506.1|CB632506
genomic: ATCTGTTTCCCCTTCCATAGAGCCTGTATTGATGAATGTTGAACAC-------A-A---AGgttctgatcc ...
EST: ATCTGTTTCCCCTTCCATAGAGCCTGTATTGATGAATGTTGAACACAAAG GCCAAGATGTACTCCAGAAACTGCAGAATAAGCAAAATGGTGAAATTAATT
genomic: ATCTGTTTCCCCTTCCATAGAGCCTGTATTGATGAATGTTGAACACAAAGgttctgatcc ... gaacatgcagGCCAAGATGTACTCCACAAACTGCAGAATAAGCAAAATGGTGAAATTAATT
cttccacatttgaacttcgaacctgactgtgatgcatatcgaagagaacatgcagGCCAAGATGTACTCCACAAACTGCAGAATAAGCAAAATGGTGAAATTAATTTTGACATGGACGATGGAGAATTATTTCGAAACTCACATTCTACCAGAAC
acctgac putative branch site (score: 10)
atttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgatcccctacctattgaatctgaacttccacatttgaacttcgaacctgactgtgatgcatatcgaagagaacatgcagGCCAAGATGTACTCCACAAACTGCAGAATAAGCAAAATGGTGAAATTAATTTTGACATGGACGATGGAGAATTATTTCGAAACTCACATTCTACCAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA