1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caattttttatattcacagagattattagctttgatatgtcatatcaccttttttgttgagtcctaggaaatttttgtctgaatgacatttcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGATTAAGGAGATTTTTGAAAAGCATGGAGAGGTCACAAAAGTCGTTTTGC
species | Oryza sativa |
transcript | LOC_Os11g14430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|29639969|gb|CB644978.1|CB644978
genomic: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|88394072|gb|CI684740.1|CI684740
genomic: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: TTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|218479912|gb|FG956819.1|FG956819
genomic: TTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|29664577|gb|CB660852.1|CB660852
genomic: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|88326998|gb|CI676114.1|CI676114
genomic: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: TTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|58609361|gb|CK037394.1|CK037394
genomic: TTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|58693279|gb|CK081966.1|CK081966
genomic: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAEST: gi|88577946|gb|CI674563.1|CI674563
genomic: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAA
EST: TTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|29640012|gb|CB645021.1|CB645021
genomic: TTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGEST: gi|38473107|gb|CF957239.1|CF957239
genomic: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
EST: GCTGGGCTGAACCTTTTGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAG GTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
genomic: GCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGgtatctttac ... tcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAG
caccttttttgttgagtcctaggaaatttttgtctgaatgacatttcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGATTAAGGAGATTTTTGAAAAGCATGGAGAGGTCACAAAAGTCGTTTTGC
catttccttt CT-rich tract
aaatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattttttatattcacagagattattagctttgatatgtcatatcaccttttttgttgagtcctaggaaatttttgtctgaatgacatttcctttacagGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGATTAAGGAGATTTTTGAAAAGCATGGAGAGGTCACAAAAGTCGTTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg