1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgctgtatagctctactgcctccactgaatcggtctaaaattgagtattgattaaatgctagtgtgatagtagttggatgctttgcattttgcattccagGATGGTGTACAAACGTTTAATGAAG
species | Oryza sativa |
transcript | LOC_Os11g13990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tattgattaaatgctagtgtgatagtagttggatgctttgcattttgcattccagGATGGTGTACAAACGTTTAATGAAG
tattgat putative branch site (score: 4)
attaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgtatagctctactgcctccactgaatcggtctaaaattgagtattgattaaatgctagtgtgatagtagttggatgctttgcattttgcattccagGATGGTGTACAAACGTTTAATGAAG
tgctgta
- - - - - - -tactgcc
- - - - - - - - - - - - ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcatt