1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccggttcgctgactctatctttgatgaggaacatttcccggcattacggggagacttcaagtaccagaaagaatgctaggaaattgattgggatgcccagGGTATTCCAGCCTCAGACCCACGTACTACTGAAGCTGAACTTCAAGTTCAGAAAATTATACATTTGCAAAGACTTGCAAATAACCTGCCAGATGCATTTA
species | Oryza sativa |
transcript | LOC_Os11g10500.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
acggggagacttcaagtaccagaaagaatgctaggaaattgattgggatgcccagGGTATTCCAGCCTCAGACCCACGTACTACTGAAGCTGAACTTCAAGTTCAGAAAATTATACATTTGCAAAGACTTGCAAATAACCTGCCAGATGCATTTA
aattgat putative branch site (score: 4)
aaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccggttcgctgactctatctttgatgaggaacatttcccggcattacggggagacttcaagtaccagaaagaatgctaggaaattgattgggatgcccagGGTATTCCAGCCTCAGACCCACGTACTACTGAAGCTGAACTTCAAGTTCAGAAAATTATACATTTGCAAAGACTTGCAAATAACCTGCCAGATGCATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - ttgatga
- - - - - - - - - - - - - - - - - - cccggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg