1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cacaggattattgcgtagggtcgtgtgctgtccaaacgttttatgataaagattttgttagctttaacccccaatgctcatttgtttccactttccacagTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCG
species | Oryza sativa |
transcript | LOC_Os11g07970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAG TTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTEST: gi|29667278|gb|CB663553.1|CB663553
genomic: AGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAGgtgaggaaca ... ctttccacagTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGT
EST: AGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAG TTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTEST: gi|58683251|gb|CK071938.1|CK071938
genomic: AGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAGgtgaggaaca ... ctttccacagTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGT
EST: AGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAA TTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTG
genomic: AGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAGgtgaggaaca ... ctttccacagTT-ATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTG
ataaagattttgttagctttaacccccaatgctcatttgtttccactttccacagTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCG
ctttaac putative branch site (score: 11)
tttgtttccactttcc putative PPT
attttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaggattattgcgtagggtcgtgtgctgtccaaacgttttatgataaagattttgttagctttaacccccaatgctcatttgtttccactttccacagTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - ttatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaatgc