1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtattttttcagaagaaaaaagaaaaggaaagacttatcgtgagccatgacactagtgtactgcttaccacagCCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAAAGCACTGGATACGTTATCTCCAGG
species | Oryza sativa |
transcript | LOC_Os11g06760.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAATTGACATCACGGACACTTGGGAACCTTTGGAAGAAGGCCTTCTCCC CCTAGAGACCACCTGGCATGTATCAATGATCGCCATAACATTATCCAAGAAEST: gi|66916064|gb|CX102912.1|CX102912
genomic: TCAATTGACATCACGGACACTTGGGAACCTTTGGAAGAAGGCCTTCTCCCgtaagtattt ... cttaccacagCCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAA
EST: GGCCTTCTCCC CCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAAEST: gi|38474027|gb|CF958159.1|CF958159
genomic: GGCCTTCTCCCgtaagtattt ... cttaccacagCCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAA
EST: TCAATTGACATCACGGACACTTGGGAACCTTTGGAAGAAGGCCTTCTCCC CCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAAEST: gi|86897912|gb|CI289086.1|CI289086
genomic: TCAATTGACATCACGGACACTTGGGAACCTTTGGAAGAAGGCCTTCTCCCgtaagtattt ... cttaccacagCCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAA
EST: TCAATTGACATCACGGACACTTGGGAACCTTTGGAAGAAGGCCTTCTCCG CCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAA
genomic: TCAATTGACATCACGGACACTTGGGAACCTTTGGAAGAAGGCCTTCTCCCgtaagtattt ... cttaccacagCCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAA
aaagaaaaggaaagacttatcgtgagccatgacactagtgtactgcttaccacagCCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAAAGCACTGGATACGTTATCTCCAGG
tgcttac putative branch site (score: 41)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattttttcagaagaaaaaagaaaaggaaagacttatcgtgagccatgacactagtgtactgcttaccacagCCTAGAGACCACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAAAGCACTGGATACGTTATCTCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA