1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaggaagaaatgctctttaaattgtgttcatgcaaaacagatgaaatcgataaagctgaaaatatttgtcctatcaagagacgctgaatgcatttttcacatgtagGATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCAGGCTGTGCAGAAGCAACAAACCCAAAGAAGAAGAGGCGAGATCTAGTTC
species | Oryza sativa |
transcript | LOC_Os11g04170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAAT GATGGGAGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCAEST: gi|112787202|gb|EE592246.1|EE592246
genomic: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAATgtaaggaaga ... tcacatgtagGATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCA
EST: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAAT GATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCAEST: gi|66930576|gb|CX117424.1|CX117424
genomic: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAATgtaaggaaga ... tcacatgtagGATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCA
EST: ACGACGCCAACGAGATCAAAGATGTCATCACAGATGCAGACTCTAATAAT GATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCAEST: gi|87021466|gb|CI274073.1|CI274073
genomic: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAATgtaaggaaga ... tcacatgtagGATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCA
EST: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAAT GATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCAEST: gi|89161528|gb|CI099500.1|CI099500
genomic: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAATgtaaggaaga ... tcacatgtagGATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCA
EST: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAAT GATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCA
genomic: ACGACGCCAACGAGATCAAGGATGTCATCACAGATGCAGACTCTAATAATgtaaggaaga ... tcacatgtagGATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCA
aaagctgaaaatatttgtcctatcaagagacgctgaatgcatttttcacatgtagGATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCAGGCTGTGCAGAAGCAACAAACCCAAAGAAGAAGAGGCGAGATCTAGTTC
catttttc CT-rich tract
tgaaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaagaaatgctctttaaattgtgttcatgcaaaacagatgaaatcgataaagctgaaaatatttgtcctatcaagagacgctgaatgcatttttcacatgtagGATGGGCGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAGGATCAGGCTGTGCAGAAGCAACAAACCCAAAGAAGAAGAGGCGAGATCTAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC