1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aagtacctggtatctagagctaccaaatttcacactagaaaatatggtatctccttaaggatttacacttttactaagatcaatcagcaataacctgcagTTACTTGCATTATGGCGCTCAGGCTTCTCGCGTAGAGATACTGAAGAGAAAGAATGGGCCATTTAGCAACTGCATGTTGCGTGGATTCAAAG
species | Oryza sativa |
transcript | LOC_Os11g03270.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
ggtatctccttaaggatttacacttttactaagatcaatcagcaataacctgcagTTACTTGCATTATGGCGCTCAGGCTTCTCGCGTAGAGATACTGAAGAGAAAGAATGGGCCATTTAGCAACTGCATGTTGCGTGGATTCAAAG
caataac putative branch site (score: 4)
ttttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtacctggtatctagagctaccaaatttcacactagaaaatatggtatctccttaaggatttacacttttactaagatcaatcagcaataacctgcagTTACTTGCATTATGGCGCTCAGGCTTCTCGCGTAGAGATACTGAAGAGAAAGAATGGGCCATTTAGCAACTGCATGTTGCGTGGATTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- gtacctg
- - - - - - - - - gctacca
- - - - - - - - - - - - - - ttcacac
- - - - - - - - - - - - - - - - - - agaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagatcaa