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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcacaattgatattaccttccactccttttaactatcatggacagttattaacaacatataggaaactgcattttggatcttttattcagAGCTTCACAAAGCAGAGCAAATTCACGTATGGCCTCATAGTGGAAGAGATTACAACACGCGATGAGAATAACAATATATGTACACATGGTTCTCGACAAT

Basic information

species Oryza sativa
transcript LOC_Os11g02460.2
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatggacagttattaacaacatataggaaactgcattttggatcttttattcagAGCTTCACAAAGCAGAGCAAATTCACGTATGGCCTCATAGTGGAAGAGATTACAACACGCGATGAGAATAACAATATATGTACACATGGTTCTCGACAAT
           tattaac  putative branch site (score: 1)
                                           tcttttattc  putative PPT
          ttattaacaacatata  TA-rich tract