1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtagtcgttgtctatactatcatgaatataaaacaagtatagattgtatcatcttactgcttggtaaatactaattttgtacgaaccaccacatttgcagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCT
species | Oryza sativa |
transcript | LOC_Os11g01740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTCACTTGGCTAGCGCGCATGAAAATTCTTTTGGGTACTGCAAAGGC CCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATEST: gi|58607362|gb|CK035395.1|CK035395
genomic: CTCTCACTTGGCTAGCGCGCATGAAAATTCTTTTGGGTACTGCAAAGGCgtgagtaact ... acatttgcagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATAT
EST: TCTCTCACTTGGCTAGCGCGCATGAAAATTCTTTTGGGTACTGCAAAGGC CCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATAT
genomic: TCTCTCACTTGGCTAGCGCGCATGAAAATTCTTTTGGGTACTGCAAAGGCgtgagtaact ... acatttgcagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATAT
gtatcatcttactgcttggtaaatactaattttgtacgaaccaccacatttgcagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCT
tactaat putative branch site (score: 25)
taaatactaattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtcgttgtctatactatcatgaatataaaacaagtatagattgtatcatcttactgcttggtaaatactaattttgtacgaaccaccacatttgcagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCT
- - - - - - - - - - catgaat
- - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaccac